Sphingopyxis macrogoltabida strain EY-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis macrogoltabida strain EY-1 is a Gram-negative bacterium characterized by its rod shape. This organism is isolated from soil environments, indicating its ecological role in terrestrial ecosystems. The strain possesses six replicons, which suggests a complex genomic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons can facilitate the organism's ability to manage various environmental stresses and potentially enhance its capacity for horizontal gene transfer. This could be significant in soil ecosystems, where interactions with other microbial communities are common. The strain is cataloged under several accessions, including NZ_CP012700.1, NZ_CP012701.1, NZ_CP012703.1, NZ_CP012705.1, NZ_CP012702.1, and NZ_CP012704.1, which provide a basis for further genomic analysis and understanding of its genetic makeup. In summary, Sphingopyxis macrogoltabida strain EY-1's rod shape, Gram-negative classification, and multiple replicons suggest a well-adapted soil bacterium with potential roles in nutrient cycling and interactions within the microbial community. Its ecological significance may be further explored through genomic studies, which could reveal insights into its metabolic pathways and environmental resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis macrogoltabida
Strainstrain EY-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis macrogoltabida strain EY-1


Gene Summary

Adenine Count

11389 bp

Thymine Count

11780 bp

Guanine Count

17742 bp

Cytosine Count

17981 bp

Genome Length

58892 bp

Protein-coding Genes

72 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication initiator protein aAN936_RS23485P60119Positive451 - 156342000.3
ribbon-helix-helix domain-containing proteinAN936_RS23490Not AvailableNegative1627 - 194110868.0
para family partition atpaseAN936_RS23495Not AvailableNegative1938 - 259122798.1
sprt-like domain-containing proteinAN936_RS23500Not AvailableNegative2718 - 335922584.1
type ii toxin-antitoxin system relb/dinj family antitoxinAN936_RS23505A0A140ND86Positive3774 - 405510314.4
type ii toxin-antitoxin system yafq family toxinAN936_RS23510Not AvailablePositive4024 - 434412212.5
helix-turn-helix domain-containing proteinAN936_RS23515Not AvailablePositive4380 - 479914875.6
dna-binding transcriptional regulatorAN936_RS23520Not AvailablePositive4869 - 50125276.64
hypothetical proteinAN936_RS24535Not AvailablePositive5026 - 52327667.98
hypothetical proteinAN936_RS23530Not AvailableNegative5204 - 54318138.64

Displaying genes 1 – 10 of 4899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.