Dehalogenimonas sp. WBC-2

sphere

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalogenimonas

Description

Dehalogenimonas sp. WBC-2 is a spherical bacterium characterized by the presence of flagella, which may contribute to its motility in various environments. This organism possesses a single replicon, indicating a streamlined genetic architecture that may facilitate efficient replication and adaptation. The genomic information for Dehalogenimonas sp. WBC-2 can be referenced under the accession number NZ_CP011392.1. As a member of the Dehalogenimonas genus, this species is likely involved in the bioremediation of halogenated compounds, which are often pollutants in industrial waste. The ability to dehalogenate these compounds is a significant ecological function, as it helps mitigate the impact of hazardous substances on the environment and human health. The presence of flagella suggests that Dehalogenimonas sp. WBC-2 may be motile, allowing it to navigate toward suitable habitats or substrates, potentially enhancing its role in bioremediation processes. The spherical shape could influence its interaction with other microorganisms and its efficiency in metabolic activities. In summary, Dehalogenimonas sp. WBC-2 exemplifies a specialized bacterium that plays a crucial role in environmental detoxification, with its motility and genetic characteristics likely enhancing its ecological effectiveness in degrading harmful halogenated compounds.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalogenimonas
SpeciesDehalogenimonas sp. WBC-2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shapesphere
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalogenimonas sp. WBC-2


Gene Summary

Adenine Count

439377 bp

Thymine Count

437518 bp

Guanine Count

422746 bp

Cytosine Count

426087 bp

Genome Length

1725728 bp

Protein-coding Genes

1686 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaDGWBC_RS00005B7GFK8Positive176 - 150749568.0
30s ribosomal protein s20DGWBC_RS00010B2V2H7Negative1591 - 18549164.21
orotidine-5'-phosphate decarboxylaseDGWBC_RS00015Q3ZAI1Positive1994 - 279128250.8
duf951 domain-containing proteinDGWBC_RS00020Not AvailablePositive2822 - 30137405.33
merr family transcriptional regulatorDGWBC_RS00025Q3ZWB2Positive3010 - 417342316.5
dihydropteroate synthaseDGWBC_RS00030Q05621Positive4297 - 513929862.2
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseDGWBC_RS00035P0DB10Positive5136 - 566019143.7
patatin-like phospholipase family proteinDGWBC_RS00040O34731Positive5657 - 646028272.1
rrf2 family transcriptional regulatorDGWBC_RS00045P33395Positive7345 - 778816265.8
o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family proteinDGWBC_RS00050P94890Positive7830 - 912846541.7

Displaying genes 1 – 10 of 1739 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

108 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da

Displaying 1–10 of 108 metabolites

Health Effects

No health effects information available for this bacterium.