Dehalogenimonas alkenigignens str. IP3-3

sphereanaerobic

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalogenimonas

Description

Dehalogenimonas alkenigignens str. IP3-3 is a Gram-negative, non-spore-forming spherical bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 32.0°C. This organism is notable for its ability to dehalogenate alkenes, a process that is significant in bioremediation and the detoxification of halogenated compounds in the environment. As a member of the microbial community, D. alkenigignens str. IP3-3 plays a crucial role in the degradation of environmental pollutants, particularly in anaerobic habitats where halogenated alkenes may accumulate. Its unique metabolic capabilities suggest potential applications in biotechnological processes aimed at environmental cleanup. The ability to grow optimally at 32.0°C indicates that it may be well-suited for temperate environments where such temperatures are prevalent. Understanding the physiological traits and metabolic pathways of D. alkenigignens str. IP3-3 could provide insights into its interactions within microbial consortia and its effectiveness in bioremediation strategies, particularly in sites contaminated with industrial solvents and chlorinated hydrocarbons.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalogenimonas
SpeciesDehalogenimonas alkenigignens
StrainIP3-3

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Image of Dehalogenimonas alkenigignens str. IP3-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalogenimonas alkenigignens str. IP3-3


Gene Summary

Adenine Count

408157 bp

Thymine Count

408044 bp

Guanine Count

517942 bp

Cytosine Count

515649 bp

Genome Length

1849792 bp

Protein-coding Genes

1932 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
phage integrase familyDEALK_00010Not Available+1 - 51419196.9
hypothetical proteinDEALK_00020Not Available+507 - 81211528.5
hypothetical proteinDEALK_00030Not Available+812 - 228754024.4
hypothetical proteinDEALK_00040Not Available+2297 - 283020756.7
phage integrase familyDEALK_00050Not Available+2827 - 353126411.0
hypothetical proteinDEALK_00060Not Available-3727 - 38916157.62
putative amidohydrolaseDEALK_00070Not Available-4401 - 517428504.5
atp:corrinoid adenosyltransferaseDEALK_00080Not Available-5168 - 561715952.0
precorrin-6y c5,15-methyltransferase (decarboxylating)DEALK_00090Q58917-5640 - 633525383.8
abc-type fe3+-hydroxamate transport system, periplasmic componentDEALK_00100O34805-6328 - 721532409.0

Displaying genes 1 – 10 of 1984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

96 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 96 metabolites