Vibrio cholerae strain TSY216

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae strain TSY216 is a Gram-negative, rod-shaped bacterium characterized by its arrangement in single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. As a heterotroph, Vibrio cholerae strain TSY216 obtains its energy by metabolizing organic compounds, which contributes to its adaptability in diverse habitats. The optimal growth temperature for this strain is approximately 20.0 degrees Celsius, suggesting a preference for cooler environments. This temperature range may indicate its ecological niche, possibly aligning with habitats such as coastal waters or estuarine systems where nutrient availability is influenced by temperature and organic matter influx. The ability of Vibrio cholerae strain TSY216 to occupy multiple habitats highlights its ecological versatility, potentially allowing it to interact with various microbial communities and contribute to biogeochemical cycles. Understanding the specific environmental adaptations of this strain can provide insights into its role in microbial dynamics and its potential responses to changing environmental conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
Strainstrain TSY216

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae strain TSY216
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio cholerae strain TSY216


Gene Summary

Adenine Count

278172 bp

Thymine Count

278933 bp

Guanine Count

248510 bp

Cytosine Count

245669 bp

Genome Length

1051284 bp

Protein-coding Genes

992 genes

Non-Coding Genes

4 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replication initiator protein rctb domain-containing proteinEN12_RS14175Not Available+746 - 272275282.5
hypothetical proteinEN12_RS14180Not Available-2942 - 340317775.1
pa3496 family putative envelope integrity proteinEN12_RS14185Not Available+3766 - 39637533.86
duf3283 family proteinEN12_RS14190Not Available+4126 - 43357946.66
yebc/pmpr family dna-binding transcriptional regulatorEN12_RS14195A5F1N4+4423 - 514226355.0
nad(p)-dependent oxidoreductaseEN12_RS14200O33730+5257 - 613230599.2
methyl-accepting chemotaxis proteinEN12_RS14205Q9I0I6-6236 - 789760875.3
hypothetical proteinEN12_RS14210Not Available+7900 - 80947148.67
yibl family ribosome-associated proteinEN12_RS14215P0ADL0+8175 - 853113424.5
hth-type transcriptional regulator maltEN12_RS14220Q9KNF3-8598 - 11306103595.0

Displaying genes 1 – 10 of 4898 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

187 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 187 metabolites