Flavobacterium psychrophilum strain CSF259-93

RodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium psychrophilum strain CSF259-93 is a psychrophilic, aerobic, rod-shaped bacterium that serves as a significant pathogen in aquatic environments. It is classified as a chemoheterotroph, deriving its energy from organic compounds. The strain has a specific optimal growth temperature of 15°C, reflecting its adaptation to cold-water habitats where it thrives. This bacterium is non-motile and possesses flagella, which may play a role in its adherence to surfaces in its aquatic environment. It has a single replicon and is not capable of sporulation, indicating a stable genetic structure and a reliance on other survival strategies in its cold habitats. Flavobacterium psychrophilum primarily affects fish species, notably Oncorhynchus mykiss (rainbow trout) and other members of the Salmonidae family. The pathogen is associated with bacterial cold water disease and rainbow trout fry syndrome, both of which can lead to significant health issues in fish populations, impacting aquaculture and wild fish communities. The presence of this bacterium in multiple habitats highlights its ecological significance, particularly in colder aquatic ecosystems. Understanding the traits and impacts of Flavobacterium psychrophilum strain CSF259-93 can provide insights into disease management in fisheries and the health of aquatic organisms in cold environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium psychrophilum
Strainstrain CSF259-93

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium psychrophilum strain CSF259-93
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature15
Temperature rangePsychrophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Salmonidae
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium psychrophilum strain CSF259-93


Gene Summary

Adenine Count

972036 bp

Thymine Count

986124 bp

Guanine Count

471775 bp

Cytosine Count

470800 bp

Genome Length

2900735 bp

Protein-coding Genes

2497 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpaseFE46_RS13600Not AvailablePositive1 - 3333127491.0
rrna maturation rnase ybeyFE46_RS00010Not AvailablePositive3326 - 374816662.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgFE46_RS00015Not AvailablePositive3959 - 583069381.4
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigFE46_RS00020Not AvailablePositive5994 - 684232554.5
omph family outer membrane proteinFE46_RS00025Not AvailablePositive7106 - 766921327.6
t9ss type a sorting domain-containing proteinFE46_RS00030Not AvailablePositive8503 - 1098384219.2
helix-turn-helix domain-containing proteinFE46_RS00035Not AvailablePositive11326 - 1359986897.7
dinb family proteinFE46_RS00040Not AvailableNegative14450 - 1500121685.4
crp/fnr family transcriptional regulatorFE46_RS00045Not AvailableNegative15057 - 1556619763.1
hypothetical proteinFE46_RS00050Not AvailableNegative15603 - 1598614057.5

Displaying genes 1 – 10 of 2567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

47 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003116all-trans-undecaprenyl diphosphateC55H89O7P2Chemical structure of all-trans-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.6099999Da

Displaying 1–10 of 47 metabolites

Health Effects

Health ConditionRelationReference
Bacterial cold water diseaseCausesPMC12152302
Rainbow trout fry syndromeCausesPMC12152302

Displaying health effects 1 – 2 of 2 in total