Burkholderia sp. YI23

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia sp. YI23 is characterized by having six replicons, which reflects its complex genomic architecture. This feature is significant as it may influence the bacterium's adaptability and metabolic versatility in various environments. The genomic information of Burkholderia sp. YI23 can be accessed through several accession numbers: NC_016589.1, NC_016590.1, NC_016591.1, NC_016592.1, NC_016625.1, and NC_016626.1. Each accession corresponds to different segments of its genome, providing valuable insights into its genetic makeup. Burkholderia species are known for their diverse ecological roles, often inhabiting soil and water environments. Their ability to thrive in various ecological niches can be attributed to their genomic plasticity and metabolic capabilities, which are likely supported by the presence of multiple replicons. This genomic structure may facilitate horizontal gene transfer, enabling Burkholderia sp. YI23 to acquire new traits that enhance survival and adaptation. Understanding the genetic characteristics of Burkholderia sp. YI23 contributes to the broader knowledge of Burkholderia species in ecological and environmental microbiology. The diverse genetic framework of this bacterium may play a crucial role in nutrient cycling and ecological interactions within its habitat, indicating its potential importance in maintaining ecosystem balance and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia sp. YI23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia sp. YI23 plasmid byi_1p, complete sequence.

Gene Summary

Adenine Count

361915 bp

Thymine Count

359663 bp

Guanine Count

615729 bp

Cytosine Count

613740 bp

Genome Length

1951047 bp

Protein-coding Genes

1800 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive1 - 1526Not Available
Trna-ileNot AvailableNot AvailablePositive1589 - 1665Not Available
Trna-alaNot AvailableNot AvailablePositive1712 - 1787Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive2068 - 4949Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive5117 - 5229Not Available
type vi secretion system baseplate subunit tsseBYI23_RS22925Not AvailableNegative5369 - 577315611.6
is21-like element helper atpase istbBYI23_RS22930P55923Negative5858 - 662528669.6
abc transporter substrate-binding proteinBYI23_RS22935Not AvailableNegative6638 - 754334299.1
site-specific integraseBYI23_RS22940P55634Positive7675 - 893747747.4
tyrosine-type recombinase/integraseBYI23_RS22945Q72SA5Positive8934 - 992637329.0

Displaying genes 1 – 10 of 8371 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

226 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000468D-galactono-1,5-lactoneC6H10O6Chemical structure of D-galactono-1,5-lactoneNot available
Average178.14Da
Monoisotopic178.047738052Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da

Displaying 1–10 of 226 metabolites

Health Effects

No health effects information available for this bacterium.