Burkholderia sp. YI23

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia sp. YI23 is characterized by having six replicons, which reflects its complex genomic architecture. This feature is significant as it may influence the bacterium's adaptability and metabolic versatility in various environments. The genomic information of Burkholderia sp. YI23 can be accessed through several accession numbers: NC_016589.1, NC_016590.1, NC_016591.1, NC_016592.1, NC_016625.1, and NC_016626.1. Each accession corresponds to different segments of its genome, providing valuable insights into its genetic makeup. Burkholderia species are known for their diverse ecological roles, often inhabiting soil and water environments. Their ability to thrive in various ecological niches can be attributed to their genomic plasticity and metabolic capabilities, which are likely supported by the presence of multiple replicons. This genomic structure may facilitate horizontal gene transfer, enabling Burkholderia sp. YI23 to acquire new traits that enhance survival and adaptation. Understanding the genetic characteristics of Burkholderia sp. YI23 contributes to the broader knowledge of Burkholderia species in ecological and environmental microbiology. The diverse genetic framework of this bacterium may play a crucial role in nutrient cycling and ecological interactions within its habitat, indicating its potential importance in maintaining ecosystem balance and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia sp. YI23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia sp. YI23 plasmid byi_3p, complete sequence.

Gene Summary

Adenine Count

23601 bp

Thymine Count

23140 bp

Guanine Count

34902 bp

Cytosine Count

33589 bp

Genome Length

115232 bp

Protein-coding Genes

99 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive1 - 1526Not Available
Trna-ileNot AvailableNot AvailablePositive1589 - 1665Not Available
Trna-alaNot AvailableNot AvailablePositive1712 - 1787Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive2068 - 4949Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive5117 - 5229Not Available
type vi secretion system baseplate subunit tsseBYI23_RS22925Not AvailableNegative5369 - 577315611.6
is21-like element helper atpase istbBYI23_RS22930P55923Negative5858 - 662528669.6
abc transporter substrate-binding proteinBYI23_RS22935Not AvailableNegative6638 - 754334299.1
site-specific integraseBYI23_RS22940P55634Positive7675 - 893747747.4
tyrosine-type recombinase/integraseBYI23_RS22945Q72SA5Positive8934 - 992637329.0

Displaying genes 1 – 10 of 8371 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004323,5-dichlorocatecholC6H4Cl2O2Chemical structure of 3,5-dichlorocatecholNot available
Average179.001Da
Monoisotopic177.9588348Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0004987(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoateC6H5O4Chemical structure of (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoateNot available
Average141.103Da
Monoisotopic141.0193322Da
BASm0007610(E)-feruloyl-CoAC31H40N7O19P3SChemical structure of (E)-feruloyl-CoANot available
Average939.67Da
Monoisotopic939.1334486Da
BASm00077112''-O-succinyl-ADP-D-riboseC19H24N5O17P2Chemical structure of 2''-O-succinyl-ADP-D-riboseNot available
Average656.368Da
Monoisotopic656.065889069Da
BASm0008579keto-L-tagatoseC6H12O6Chemical structure of keto-L-tagatoseNot available
Average180.156Da
Monoisotopic180.063388106Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.