Rhodobacter capsulatus SB 1003

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter capsulatus SB 1003 is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. It is classified as a chemoheterotroph, meaning it derives its energy from organic compounds rather than light or inorganic substances. This organism is a facultative anaerobe, capable of surviving in both the presence and absence of oxygen, which enhances its adaptability to varying environmental conditions. R. capsulatus SB 1003 possesses flagella, allowing for mobility, which may aid in its ability to navigate through aquatic habitats in search of nutrients. The bacterium is mesophilic, with an optimal growth temperature of 30°C, indicating its preference for moderate temperatures. Genetically, R. capsulatus SB 1003 contains a single replicon and has a structure characterized by two membranes, typical of Gram-negative bacteria. It is notable for being free-living and non-pathogenic, which suggests that it does not cause disease in other organisms. The ecological role of R. capsulatus SB 1003 as a free-living bacterium in aquatic ecosystems may contribute to nutrient cycling and the breakdown of organic matter. Its ability to thrive under varying oxygen conditions and utilize organic compounds could play an important role in the dynamics of microbial communities in aquatic environments, particularly in the context of organic matter degradation and nutrient availability.

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodobacter capsulatus SB 1003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Rhodobacter capsulatus SB 1003


Gene Summary

Adenine Count

23066 bp

Thymine Count

21522 bp

Guanine Count

43911 bp

Cytosine Count

44463 bp

Genome Length

132962 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter permeaseRCAP_RS17510Not AvailableNegative61 - 79226009.7
amino acid abc transporter permeaseRCAP_RS17515Not AvailableNegative798 - 146624256.3
transporter substrate-binding domain-containing proteinRCAP_RS17520Not AvailableNegative1527 - 236329278.3
amino acid abc transporter atp-binding proteinRCAP_RS17525Not AvailableNegative2421 - 316128026.8
asparaginaseRCAP_RS17530Not AvailablePositive3403 - 440135036.8
gntr family transcriptional regulatorRCAP_RS17535Not AvailablePositive4422 - 514726324.9
pfkb family carbohydrate kinaseRCAP_RS17540Not AvailableNegative5170 - 603329796.6
sugar phosphate isomerase/epimerase family proteinRCAP_RS17545Not AvailableNegative6030 - 689631426.6
laci family dna-binding transcriptional regulatorRCAP_RS17550Not AvailableNegative7066 - 811536585.3
hypothetical proteinRCAP_RS19740Not AvailableNegative8308 - 84545012.98

Displaying genes 1 – 10 of 152 in total

Metabolites

1693 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1693 metabolites

Health Effects

No health effects information available for this bacterium.