Rhodobacter capsulatus SB 1003

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter capsulatus SB 1003 is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. It is classified as a chemoheterotroph, meaning it derives its energy from organic compounds rather than light or inorganic substances. This organism is a facultative anaerobe, capable of surviving in both the presence and absence of oxygen, which enhances its adaptability to varying environmental conditions. R. capsulatus SB 1003 possesses flagella, allowing for mobility, which may aid in its ability to navigate through aquatic habitats in search of nutrients. The bacterium is mesophilic, with an optimal growth temperature of 30°C, indicating its preference for moderate temperatures. Genetically, R. capsulatus SB 1003 contains a single replicon and has a structure characterized by two membranes, typical of Gram-negative bacteria. It is notable for being free-living and non-pathogenic, which suggests that it does not cause disease in other organisms. The ecological role of R. capsulatus SB 1003 as a free-living bacterium in aquatic ecosystems may contribute to nutrient cycling and the breakdown of organic matter. Its ability to thrive under varying oxygen conditions and utilize organic compounds could play an important role in the dynamics of microbial communities in aquatic environments, particularly in the context of organic matter degradation and nutrient availability.

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodobacter capsulatus SB 1003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence.

Gene Summary

Adenine Count

23066 bp

Thymine Count

21522 bp

Guanine Count

43911 bp

Cytosine Count

44463 bp

Genome Length

132962 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
taxi family trap transporter solute-binding subunitRCAP_RS17785Not AvailablePositive47030 - 4804034789.4
trap transporter permeaseRCAP_RS17790Not AvailablePositive48124 - 5018472847.4
type ii toxin-antitoxin system phd/yefm family antitoxinRCAP_RS17795Not AvailablePositive50541 - 507838667.39
type ii toxin-antitoxin system vapc family toxinRCAP_RS17800Not AvailablePositive50783 - 5118414731.7
nnrs family proteinRCAP_RS17805Not AvailableNegative51353 - 5257341945.1
hypothetical proteinRCAP_RS17810Not AvailablePositive52696 - 529629143.52
pepsy-associated tm helix domain-containing proteinRCAP_RS17815Not AvailableNegative52996 - 5441450450.1
hypothetical proteinRCAP_RS18720Not AvailableNegative54445 - 5484313751.2
fad:protein fmn transferaseRCAP_RS17825Not AvailableNegative54896 - 5580431299.6
nitrous oxide reductase accessory protein noslRCAP_RS17830Not AvailableNegative55804 - 5636420319.4

Displaying genes 61 – 70 of 152 in total

Metabolites

1693 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1693 metabolites

Health Effects

No health effects information available for this bacterium.