Rhodobacter capsulatus SB 1003

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter capsulatus is a purple, nonsulfur photosynthetic bacterium. The biochemical versatility to choose between photo- and heterotrophic growth and nitrogen fixation is packed in a genome that is 75% of the size of the Escherichia coli genome. Ease of plating and generation of mutations together with convenient systems for cloning and genetic analysis make R.capsulatus a popular model system for studies of photochemical reaction centers and nitrogen fixation. The GTA (gene transfer agent) has been used for insertional mutagenesis, gene replacement, and linkage analysis (from http://rhodo.img.cas.cz/). (EBI Integr8)

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodobacter capsulatus SB 1003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Rhodobacter capsulatus SB 1003

NC_014035.1

Gene Summary

Adenine Count

23066 bp

Thymine Count

21522 bp

Guanine Count

43911 bp

Cytosine Count

44463 bp

Genome Length

132962 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
amino acid abc transporter permeaseRCAP_RS17510Not Available-61 - 79226009.7
amino acid abc transporter permeaseRCAP_RS17515Not Available-798 - 146624256.3
transporter substrate-binding domain-containing proteinRCAP_RS17520Not Available-1527 - 236329278.3
amino acid abc transporter atp-binding proteinRCAP_RS17525Not Available-2421 - 316128026.8
asparaginaseRCAP_RS17530Not Available+3403 - 440135036.8
gntr family transcriptional regulatorRCAP_RS17535Not Available+4422 - 514726324.9
pfkb family carbohydrate kinaseRCAP_RS17540Not Available-5170 - 603329796.6
sugar phosphate isomerase/epimerase family proteinRCAP_RS17545Not Available-6030 - 689631426.6
laci family dna-binding transcriptional regulatorRCAP_RS17550Not Available-7066 - 811536585.3
hypothetical proteinRCAP_RS19740Not Available-8308 - 84545012.98

Displaying genes 1 – 10 of 152 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1693 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1693 metabolites