Phocaeicola coprophilus DSM 18228 = JCM 13818 strain DSM 18228

Gram-negativeNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprophilus DSM 18228, also known by its strain designation JCM 13818, is a Gram-negative, anaerobic, chemoheterotrophic bacterium. This organism exhibits a mesophilic temperature range, indicating its optimal growth occurs in moderate temperature conditions typical of many environments. P. coprophilus is non-motile, which is consistent with its ecological niche, as it does not require mobility to thrive in its habitat. This bacterium has a single replicon, suggesting a relatively simple genomic organization. P. coprophilus is primarily associated with Homo sapiens, indicating it may inhabit the human gut or other related environments. Its anaerobic nature reflects its adaptation to oxygen-limited conditions, which is common in the gastrointestinal tract. The presence of flagella, despite its non-motility, may serve various functions, possibly in sensing environmental cues rather than in locomotion. As a chemoheterotroph, P. coprophilus relies on organic compounds for energy, further indicating its role in the decomposition of organic matter. Ecologically, P. coprophilus contributes to the microbial diversity of the human gut microbiome, playing a potential role in the breakdown of dietary components and the maintenance of gut health. The study of this bacterium can provide insights into the interactions within the gut ecosystem, revealing its significance in human health and disease dynamics. Understanding its metabolic pathways and ecological interactions may also shed light on the broader implications of gut microbiota composition on human physiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprophilus
StrainDSM 18228 = JCM 13818 strain DSM 18228

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola coprophilus DSM 18228 = JCM 13818 strain DSM 18228


Gene Summary

Adenine Count

1028335 bp

Thymine Count

1064266 bp

Guanine Count

898775 bp

Cytosine Count

864067 bp

Genome Length

3855443 bp

Protein-coding Genes

3838 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBACCOPRO_00001Not AvailablePositive1 - 72828243.3
5s ribosomal rnaNot AvailableNot AvailablePositive33 - 103Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive200 - 3082Not Available
hypothetical proteinBACCOPRO_00002Not AvailablePositive709 - 204952880.2
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive1428 - 1733Not Available
hypothetical proteinBACCOPRO_00003Not AvailableNegative2361 - 25316469.58
hypothetical proteinBACCOPRO_00004Not AvailableNegative2521 - 26585383.37
16s ribosomal rnaNot AvailableNot AvailablePositive3536 - 5054Not Available
helicase, recd/traa familyBACCOPRO_00005Not AvailableNegative2983 - 524484659.5
hydrolase, tatd familyBACCOPRO_00006Not AvailableNegative5269 - 595826411.0

Displaying genes 1 – 10 of 3907 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

193 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 193 metabolites

Health Effects

No health effects information available for this bacterium.