Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate oxidoreductase subunit beta | BACCOPRO_00920 | Not Available | Positive | 918185 - 918781 | 21252.6 |
| aminotransferase, class i/ii | BACCOPRO_00921 | Not Available | Positive | 918778 - 920088 | 48480.3 |
| hypothetical protein | BACCOPRO_00922 | Not Available | Positive | 920117 - 921418 | 48964.1 |
| act domain protein | BACCOPRO_00923 | Not Available | Positive | 921405 - 921854 | 17069.7 |
| v-type h(+)-translocating pyrophosphatase | BACCOPRO_00924 | Not Available | Negative | 921933 - 924137 | 77112.8 |
| hypothetical protein | BACCOPRO_00925 | Not Available | Positive | 924196 - 924318 | 4939.43 |
| aconitate hydratase | BACCOPRO_00926 | Not Available | Positive | 924398 - 926659 | 82003.2 |
| isocitrate dehydrogenase, nadp-dependent | BACCOPRO_00927 | Not Available | Positive | 926686 - 927948 | 46107.8 |
| putative citrate (si)-synthase | BACCOPRO_00928 | Not Available | Positive | 927961 - 928532 | 21819.4 |
| vire n-terminal domain protein | BACCOPRO_00929 | Not Available | Negative | 928533 - 929929 | 53080.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


