Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosamine-6-phosphate deaminase | BACCOPRO_00900 | Not Available | Negative | 888969 - 889760 | 29151.8 |
| susd family protein | BACCOPRO_00901 | Not Available | Negative | 889954 - 891990 | 76436.2 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_00902 | Not Available | Negative | 892004 - 893665 | 62110.2 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_00903 | Not Available | Negative | 893732 - 895195 | 52982.6 |
| site-specific recombinase, phage integrase family | BACCOPRO_00904 | Not Available | Positive | 896146 - 897103 | 36774.4 |
| mobilization family protein | BACCOPRO_00905 | Not Available | Positive | 897105 - 897608 | 19170.1 |
| hypothetical protein | BACCOPRO_00906 | Not Available | Positive | 897656 - 898108 | 17755.5 |
| hypothetical protein | BACCOPRO_00907 | Not Available | Positive | 898243 - 899133 | 34598.9 |
| hypothetical protein | BACCOPRO_00908 | Not Available | Positive | 899300 - 900463 | 43735.7 |
| hypothetical protein | BACCOPRO_00909 | Not Available | Positive | 900468 - 900800 | 13036.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


