Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 2, sugar binding domain protein | BACCOPRO_00890 | Not Available | Positive | 871820 - 874387 | 98358.9 |
| glycosyl hydrolase family 20, catalytic domain protein | BACCOPRO_00891 | Not Available | Positive | 874442 - 876778 | 87495.5 |
| glycosyl hydrolase family 20, catalytic domain protein | BACCOPRO_00892 | Not Available | Positive | 876786 - 878857 | 77838.2 |
| putative alpha-1,2-mannosidase | BACCOPRO_00893 | Not Available | Positive | 878869 - 881103 | 84860.6 |
| hypothetical protein | BACCOPRO_00895 | Not Available | Negative | 881125 - 881271 | 5479.82 |
| hypothetical protein | BACCOPRO_00894 | Not Available | Positive | 881238 - 883232 | 74969.0 |
| hypothetical protein | BACCOPRO_00896 | Not Available | Negative | 883264 - 883416 | 5630.69 |
| cellulase (glycosyl hydrolase family 5) | BACCOPRO_00897 | Not Available | Negative | 883441 - 885015 | 60043.7 |
| bnr/asp-box repeat protein | BACCOPRO_00898 | Not Available | Positive | 885144 - 886778 | 61035.1 |
| putative glucosamine-6-phosphate deaminase | BACCOPRO_00899 | Not Available | Negative | 886851 - 888836 | 74833.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


