Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00077 | Not Available | Negative | 78153 - 78278 | 4473.1 |
| hypothetical protein | BACCOPRO_00078 | Not Available | Positive | 78322 - 78456 | 5013.06 |
| putative type i restriction-modification system, m subunit | BACCOPRO_00079 | Not Available | Positive | 79326 - 80834 | 56663.5 |
| type i restriction modification dna specificity domain protein | BACCOPRO_00080 | Not Available | Positive | 80858 - 82072 | 46265.0 |
| hypothetical protein | BACCOPRO_00081 | Not Available | Positive | 82080 - 82484 | 16055.3 |
| hypothetical protein | BACCOPRO_00082 | Not Available | Positive | 82509 - 83237 | 26654.0 |
| hypothetical protein | BACCOPRO_00083 | Not Available | Positive | 83221 - 83352 | 5121.1 |
| frg domain protein | BACCOPRO_00084 | Not Available | Positive | 83401 - 84600 | 45893.6 |
| type i site-specific deoxyribonuclease, hsdr family | BACCOPRO_00085 | Not Available | Positive | 84603 - 87731 | 119562.0 |
| hypothetical protein | BACCOPRO_00086 | Not Available | Positive | 87765 - 91535 | 146394.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


