Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribbon-helix-helix protein, copg family | BACCOPRO_00879 | Not Available | Positive | 864599 - 864865 | 10468.6 |
| hypothetical protein | BACCOPRO_00881 | Not Available | Negative | 865046 - 865471 | 14702.6 |
| hypothetical protein | BACCOPRO_00882 | Not Available | Positive | 865639 - 865875 | 8918.71 |
| hypothetical protein | BACCOPRO_00883 | Not Available | Positive | 866070 - 866570 | 18511.1 |
| hypothetical protein | BACCOPRO_00884 | Not Available | Negative | 866559 - 866708 | 5706.05 |
| putative dna-binding protein | BACCOPRO_00885 | Not Available | Positive | 866761 - 867201 | 15718.7 |
| hypothetical protein | BACCOPRO_00886 | Not Available | Positive | 867262 - 867405 | 5625.0 |
| hypothetical protein | BACCOPRO_00887 | Not Available | Positive | 867482 - 867799 | 12294.8 |
| cutc family protein | BACCOPRO_00888 | Not Available | Positive | 868055 - 868801 | 26909.6 |
| transglutaminase-like protein | BACCOPRO_00889 | Not Available | Negative | 868904 - 871642 | 102545.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


