Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00870 | Not Available | Negative | 854848 - 856113 | 47691.6 |
| hdig domain protein | BACCOPRO_00871 | Not Available | Positive | 856167 - 856703 | 20254.4 |
| hypothetical protein | BACCOPRO_00872 | Not Available | Positive | 856793 - 859534 | 104624.0 |
| uracil-dna glycosylase | BACCOPRO_00873 | Not Available | Negative | 859619 - 860281 | 25049.9 |
| aspartate--ammonia ligase | BACCOPRO_00874 | Not Available | Negative | 860302 - 861342 | 39863.3 |
| Trna-arg | Not Available | Not Available | Positive | 861566 - 861640 | Not Available |
| site-specific recombinase, phage integrase family | BACCOPRO_00876 | Not Available | Positive | 861808 - 863064 | 48081.2 |
| dna binding domain, excisionase family | BACCOPRO_00877 | Not Available | Positive | 863076 - 863306 | 8679.83 |
| hypothetical protein | BACCOPRO_00878 | Not Available | Positive | 863318 - 864193 | 33817.1 |
| hypothetical protein | BACCOPRO_00880 | Not Available | Negative | 864376 - 864600 | 8583.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


