Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase, phage integrase family | BACCOPRO_00850 | Not Available | Negative | 837500 - 838666 | 45987.7 |
| citrate (si)-synthase | BACCOPRO_00851 | Not Available | Positive | 838774 - 839545 | 29060.1 |
| sel1 repeat protein | BACCOPRO_00852 | Not Available | Positive | 839608 - 840711 | 41924.3 |
| amp-binding domain protein | BACCOPRO_00853 | Not Available | Negative | 841141 - 841731 | 22214.8 |
| amp-binding domain protein | BACCOPRO_00854 | Not Available | Negative | 841732 - 842796 | 40380.1 |
| dna-binding helix-turn-helix protein | BACCOPRO_00855 | Not Available | Negative | 842808 - 843386 | 21406.4 |
| hypothetical protein | BACCOPRO_00857 | Not Available | Negative | 843439 - 843564 | 4871.17 |
| putative membrane protein | BACCOPRO_00856 | Not Available | Positive | 843538 - 844443 | 34167.3 |
| atpase family associated with various cellular activities (aaa) | BACCOPRO_00858 | Not Available | Positive | 844431 - 846059 | 61946.2 |
| hypothetical protein | BACCOPRO_00859 | Not Available | Positive | 846115 - 847374 | 49096.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


