Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 region 2 | BACCOPRO_00840 | Not Available | Positive | 823927 - 824882 | 36819.3 |
| hypothetical protein | BACCOPRO_00841 | Not Available | Positive | 825030 - 825437 | 15252.7 |
| hypothetical protein | BACCOPRO_00842 | Not Available | Positive | 825445 - 826677 | 45354.4 |
| metal ion transporter, metal ion (mn2+/fe2+) transporter (nramp) family | BACCOPRO_00843 | Not Available | Positive | 826750 - 828012 | 45954.0 |
| had hydrolase, family ia, variant 3 | BACCOPRO_00844 | Not Available | Positive | 828029 - 828676 | 24684.6 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | BACCOPRO_00845 | Not Available | Positive | 828683 - 829573 | 32059.9 |
| transporter, major facilitator family protein | BACCOPRO_00846 | Not Available | Positive | 829600 - 830730 | 41899.6 |
| atp-binding cassette protein, chvd family | BACCOPRO_00847 | Not Available | Positive | 830813 - 832501 | 63903.4 |
| tonb-dependent receptor plug domain protein | BACCOPRO_00848 | Not Available | Positive | 832919 - 835498 | 95049.3 |
| hypothetical protein | BACCOPRO_00849 | Not Available | Positive | 835519 - 837435 | 70770.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


