Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna methyltransferase gidb | BACCOPRO_00769 | Not Available | Negative | 759507 - 760136 | 23663.8 |
| hypothetical protein | BACCOPRO_00770 | Not Available | Negative | 760158 - 760706 | 20776.6 |
| hypothetical protein | BACCOPRO_00771 | Not Available | Negative | 760703 - 761017 | 11234.6 |
| lipoyl(octanoyl) transferase | BACCOPRO_00772 | Not Available | Positive | 761177 - 761836 | 24836.7 |
| hypothetical protein | BACCOPRO_00773 | Not Available | Positive | 761909 - 762637 | 26024.0 |
| nucleoside transporter | BACCOPRO_00774 | Not Available | Positive | 762785 - 764044 | 45776.7 |
| hypothetical protein | BACCOPRO_00775 | Not Available | Positive | 764041 - 764637 | 22736.2 |
| rna methyltransferase, rsme family | BACCOPRO_00776 | Not Available | Positive | 764651 - 765349 | 26089.7 |
| abc transporter, atp-binding protein | BACCOPRO_00777 | Not Available | Positive | 765352 - 765996 | 24742.7 |
| hypothetical protein | BACCOPRO_00778 | Not Available | Positive | 766024 - 767214 | 44327.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


