Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, arac family | BACCOPRO_00759 | Not Available | Positive | 746739 - 747257 | 20280.6 |
| cof-like hydrolase | BACCOPRO_00760 | Not Available | Positive | 747282 - 748076 | 29203.1 |
| formate--tetrahydrofolate ligase | BACCOPRO_00761 | Not Available | Positive | 748166 - 749833 | 60252.9 |
| hypothetical protein | BACCOPRO_00763 | Not Available | Negative | 749975 - 750277 | 11174.5 |
| hypothetical protein | BACCOPRO_00762 | Not Available | Positive | 749981 - 750283 | 11392.8 |
| hypothetical protein | BACCOPRO_00764 | Not Available | Negative | 750289 - 751842 | 59960.5 |
| hypothetical protein | BACCOPRO_00765 | Not Available | Positive | 752074 - 753441 | 50462.1 |
| glycosyl hydrolase family 3 n-terminal domain protein | BACCOPRO_00766 | Not Available | Positive | 753476 - 755821 | 86668.5 |
| glycine dehydrogenase | BACCOPRO_00767 | Not Available | Negative | 755962 - 758811 | 104313.0 |
| metallo-beta-lactamase domain protein | BACCOPRO_00768 | Not Available | Negative | 758844 - 759482 | 23872.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


