Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc, b subunit | BACCOPRO_00749 | Not Available | Negative | 739452 - 741485 | 77646.5 |
| hypothetical protein | BACCOPRO_00750 | Not Available | Negative | 741475 - 741639 | 6170.31 |
| outer membrane assembly lipoprotein yfio | BACCOPRO_00751 | Not Available | Positive | 741656 - 742510 | 33062.1 |
| hypothetical protein | BACCOPRO_00752 | Not Available | Positive | 742545 - 742880 | 13052.4 |
| hypothetical protein | BACCOPRO_00753 | Not Available | Positive | 742890 - 743339 | 16769.3 |
| mate efflux family protein | BACCOPRO_00754 | Not Available | Negative | 743451 - 744791 | 49597.6 |
| hypothetical protein | BACCOPRO_00755 | Not Available | Negative | 744772 - 745290 | 19423.2 |
| hypothetical protein | BACCOPRO_00756 | Not Available | Negative | 745368 - 745994 | 22514.7 |
| hypothetical protein | BACCOPRO_00757 | Not Available | Negative | 745991 - 746269 | 10034.6 |
| hypothetical protein | BACCOPRO_00758 | Not Available | Positive | 746484 - 746612 | 4661.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


