Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c assembly protein | BACCOPRO_00709 | Not Available | Positive | 708145 - 708927 | 30147.2 |
| hypothetical protein | BACCOPRO_00710 | Not Available | Negative | 708939 - 709778 | 32167.5 |
| glycosyltransferase, wecb/taga/cpsf family | BACCOPRO_00711 | Not Available | Negative | 709823 - 710542 | 27808.7 |
| hypothetical protein | BACCOPRO_00712 | Not Available | Negative | 710554 - 711468 | 35879.3 |
| sefir domain protein | BACCOPRO_00713 | Not Available | Negative | 711671 - 712474 | 31018.8 |
| hypothetical protein | BACCOPRO_00714 | Not Available | Negative | 712503 - 712685 | 6831.2 |
| glycosyltransferase, group 1 family protein | BACCOPRO_00715 | Not Available | Negative | 712698 - 713825 | 43586.2 |
| glycosyltransferase, group 1 family protein | BACCOPRO_00716 | Not Available | Negative | 713791 - 714870 | 42239.1 |
| glycosyltransferase, group 1 family protein | BACCOPRO_00717 | Not Available | Negative | 714867 - 715967 | 42192.3 |
| glycosyltransferase, group 1 family protein | BACCOPRO_00718 | Not Available | Negative | 715989 - 717089 | 42153.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


