Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ftsk/spoiiie family protein | BACCOPRO_00689 | Not Available | Negative | 685475 - 688027 | 94192.6 |
| hypothetical protein | BACCOPRO_00690 | Not Available | Positive | 688122 - 688736 | 23701.8 |
| 3'-5' exonuclease | BACCOPRO_00691 | Not Available | Positive | 688762 - 689376 | 23604.5 |
| hypothetical protein | BACCOPRO_00692 | Not Available | Positive | 689363 - 690589 | 46096.9 |
| ghmp kinase, n-terminal domain protein | BACCOPRO_00693 | Not Available | Negative | 690677 - 693514 | 105340.0 |
| transcription termination/antitermination factor nusg | BACCOPRO_00694 | Not Available | Negative | 693545 - 694072 | 20171.7 |
| nad dependent epimerase/dehydratase family protein | BACCOPRO_00695 | Not Available | Negative | 694087 - 695191 | 41671.2 |
| gdp-mannose 4,6-dehydratase | BACCOPRO_00696 | Not Available | Negative | 695206 - 696285 | 41263.5 |
| l-fucose:h+ symporter permease | BACCOPRO_00697 | Not Available | Negative | 696314 - 697546 | 44660.3 |
| hypothetical protein | BACCOPRO_00698 | Not Available | Negative | 697562 - 698044 | 18221.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


