Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein | BACCOPRO_00619 | Not Available | Negative | 621124 - 622014 | 31196.4 |
| putative thioredoxin | BACCOPRO_00620 | Not Available | Negative | 622048 - 622347 | 11416.2 |
| hypothetical protein | BACCOPRO_00621 | Not Available | Positive | 622484 - 622753 | 10463.6 |
| transporter, auxin efflux carrier (aec) family protein | BACCOPRO_00622 | Not Available | Positive | 622845 - 623753 | 33212.4 |
| hypothetical protein | BACCOPRO_00623 | Not Available | Negative | 623756 - 624424 | 25697.4 |
| hypothetical protein | BACCOPRO_00624 | Not Available | Positive | 624567 - 626216 | 61669.3 |
| hypothetical protein | BACCOPRO_00625 | Not Available | Negative | 626346 - 626702 | 12305.2 |
| mate domain protein | BACCOPRO_00626 | Not Available | Positive | 626745 - 627695 | 34224.1 |
| transcriptional regulator, hxlr family | BACCOPRO_00627 | Not Available | Positive | 627888 - 628268 | 14718.1 |
| 4fe-4s binding domain protein | BACCOPRO_00628 | Not Available | Positive | 628393 - 629154 | 27814.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


