Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| auxiliary transport protein, membrane fusion protein (mfp) family protein | BACCOPRO_00599 | Not Available | Negative | 606531 - 607601 | 40566.3 |
| outer membrane efflux protein | BACCOPRO_00600 | Not Available | Negative | 607635 - 608951 | 50928.1 |
| transcriptional regulator, marr family | BACCOPRO_00601 | Not Available | Negative | 608932 - 609372 | 17254.1 |
| beta-eliminating lyase | BACCOPRO_00602 | Not Available | Negative | 609546 - 610571 | 37755.1 |
| rna methyltransferase, trmh family | BACCOPRO_00603 | Not Available | Positive | 610696 - 611544 | 30537.9 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | BACCOPRO_00604 | Not Available | Negative | 611503 - 611934 | 15792.1 |
| hypothetical protein | BACCOPRO_00605 | Not Available | Negative | 611954 - 612172 | 8625.14 |
| pyridoxamine 5'-phosphate oxidase family protein | BACCOPRO_00606 | Not Available | Positive | 612184 - 612702 | 19235.1 |
| mutator mutt protein | BACCOPRO_00607 | Not Available | Positive | 612717 - 613856 | 43548.5 |
| hypothetical protein | BACCOPRO_00608 | Not Available | Positive | 614059 - 614184 | 4771.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


