Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00589 | Not Available | Positive | 594278 - 594403 | 4582.63 |
| sel1 repeat protein | BACCOPRO_00590 | Not Available | Positive | 594454 - 595410 | 36067.2 |
| hypothetical protein | BACCOPRO_00591 | Not Available | Negative | 595446 - 595841 | 14934.6 |
| trna(ile)-lysidine synthetase | BACCOPRO_00592 | Not Available | Positive | 595930 - 597243 | 50077.5 |
| hypothetical protein | BACCOPRO_00593 | Not Available | Positive | 597391 - 597567 | 6456.86 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_00594 | Not Available | Positive | 597627 - 602135 | 172784.0 |
| response regulator receiver domain protein | BACCOPRO_00595 | Not Available | Positive | 602268 - 602990 | 27352.2 |
| tat pathway signal sequence domain protein | BACCOPRO_00596 | Not Available | Positive | 602980 - 603678 | 25999.9 |
| antioxidant, ahpc/tsa family | BACCOPRO_00597 | Not Available | Positive | 603675 - 604823 | 42393.9 |
| transporter, major facilitator family protein | BACCOPRO_00598 | Not Available | Negative | 604930 - 606534 | 61217.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


