Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| potassium uptake protein, trkh family | BACCOPRO_00047 | Not Available | Positive | 46382 - 47896 | 56636.9 |
| osmosensitive k+ channel his kinase sensor domain protein | BACCOPRO_00048 | Not Available | Positive | 47964 - 49091 | 43033.6 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_00049 | Not Available | Positive | 49103 - 50545 | 54300.0 |
| sigma-54 interaction domain protein | BACCOPRO_00050 | Not Available | Negative | 50616 - 51171 | 21604.5 |
| response regulator receiver domain protein | BACCOPRO_00051 | Not Available | Negative | 51172 - 51947 | 28306.9 |
| hypothetical protein | BACCOPRO_00052 | Not Available | Negative | 52298 - 52453 | 5664.99 |
| hypothetical protein | BACCOPRO_00053 | Not Available | Positive | 52520 - 52756 | 8798.46 |
| hypothetical protein | BACCOPRO_00054 | Not Available | Negative | 53046 - 54092 | 40063.8 |
| hypothetical protein | BACCOPRO_00055 | Not Available | Negative | 54410 - 55912 | 57961.7 |
| hypothetical protein | BACCOPRO_00056 | Not Available | Positive | 56023 - 56307 | 11005.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


