Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_00579 | Not Available | Negative | 580442 - 581725 | 48512.1 |
| sigma-54 interaction domain protein | BACCOPRO_00580 | Not Available | Negative | 581722 - 583131 | 53162.3 |
| hypothetical protein | BACCOPRO_00581 | Not Available | Positive | 583257 - 583985 | 27972.7 |
| outer membrane efflux protein | BACCOPRO_00582 | Not Available | Positive | 583958 - 584740 | 30057.9 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_00583 | Not Available | Positive | 584767 - 586017 | 48083.8 |
| efflux abc transporter, permease protein | BACCOPRO_00584 | Not Available | Positive | 586043 - 588418 | 90800.5 |
| efflux abc transporter, permease protein | BACCOPRO_00585 | Not Available | Positive | 588445 - 590850 | 90205.0 |
| hypothetical protein | BACCOPRO_00586 | Not Available | Positive | 591057 - 591176 | 4606.59 |
| efflux abc transporter, permease protein | BACCOPRO_00587 | Not Available | Positive | 591173 - 593485 | 86808.8 |
| putative bacteriocin export abc transporter, lactococcin 972 group | BACCOPRO_00588 | Not Available | Positive | 593595 - 594272 | 24981.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


