Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription termination factor rho | BACCOPRO_00569 | Not Available | Negative | 570217 - 572193 | 72763.5 |
| putative endoribonuclease l-psp | BACCOPRO_00570 | Not Available | Positive | 572520 - 572897 | 13260.0 |
| hypothetical protein | BACCOPRO_00571 | Not Available | Positive | 573013 - 574218 | 45551.5 |
| hypothetical protein | BACCOPRO_00572 | Not Available | Positive | 574225 - 574962 | 28538.8 |
| glyoxalase family protein | BACCOPRO_00573 | Not Available | Positive | 574976 - 575353 | 14750.3 |
| hypothetical protein | BACCOPRO_00574 | Not Available | Positive | 575416 - 576240 | 31673.2 |
| abc transporter, atp-binding protein | BACCOPRO_00575 | Not Available | Positive | 576319 - 578184 | 72448.7 |
| hypothetical protein | BACCOPRO_00576 | Not Available | Positive | 578174 - 578329 | 6395.81 |
| hypothetical protein | BACCOPRO_00577 | Not Available | Positive | 578414 - 579121 | 25859.1 |
| mate efflux family protein | BACCOPRO_00578 | Not Available | Negative | 579093 - 580391 | 47528.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


