Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-galactopyranose mutase | BACCOPRO_00559 | Not Available | Negative | 557734 - 558864 | 44002.1 |
| hypothetical protein | BACCOPRO_00560 | Not Available | Positive | 558998 - 562000 | 111466.0 |
| tetratricopeptide repeat protein | BACCOPRO_00561 | Not Available | Negative | 562044 - 563738 | 62904.8 |
| rna methyltransferase, trmh family, group 3 | BACCOPRO_00562 | Not Available | Negative | 563766 - 564518 | 27533.4 |
| dna repair protein recn | BACCOPRO_00563 | Not Available | Negative | 564529 - 566208 | 62867.9 |
| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase | BACCOPRO_00564 | Not Available | Negative | 566237 - 567430 | 43101.3 |
| exonuclease | BACCOPRO_00565 | Not Available | Negative | 567433 - 568209 | 29360.8 |
| dna polymerase iii, beta subunit | BACCOPRO_00566 | Not Available | Negative | 568244 - 569368 | 41380.2 |
| hypothetical protein | BACCOPRO_00567 | Not Available | Positive | 569555 - 569938 | 14532.0 |
| hypothetical protein | BACCOPRO_00568 | Not Available | Negative | 569939 - 570124 | 6867.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


