Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00549 | Not Available | Negative | 550603 - 551148 | 20807.3 |
| Trna-thr | Not Available | Not Available | Positive | 551439 - 551512 | Not Available |
| hypothetical protein | BACCOPRO_00551 | Not Available | Positive | 551602 - 551964 | 13761.7 |
| hypothetical protein | BACCOPRO_00552 | Not Available | Positive | 552017 - 552571 | 19921.7 |
| hypothetical protein | BACCOPRO_00553 | Not Available | Negative | 552673 - 552918 | 9378.56 |
| pyruvate formate-lyase 1-activating enzyme | BACCOPRO_00554 | Not Available | Negative | 553001 - 553729 | 27969.5 |
| formate c-acetyltransferase | BACCOPRO_00555 | Not Available | Negative | 553890 - 556112 | 83542.8 |
| bacterial transferase hexapeptide repeat protein | BACCOPRO_00556 | Not Available | Negative | 556382 - 556774 | 13851.5 |
| hypothetical protein | BACCOPRO_00557 | Not Available | Negative | 556775 - 556992 | 8667.35 |
| flavin reductase | BACCOPRO_00558 | Not Available | Negative | 557008 - 557475 | 17213.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


