Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine and deoxycytidylate deaminase zinc-binding region | BACCOPRO_00539 | Not Available | Negative | 542208 - 542648 | 16464.8 |
| hypothetical protein | BACCOPRO_00540 | Not Available | Negative | 542673 - 543137 | 17250.6 |
| peptidase family m3 | BACCOPRO_00541 | Not Available | Negative | 543155 - 545191 | 78574.0 |
| cyclic nucleotide-binding domain protein | BACCOPRO_00542 | Not Available | Negative | 545201 - 545911 | 27208.8 |
| putative membrane protein, marc family | BACCOPRO_00543 | Not Available | Positive | 546103 - 546702 | 21862.7 |
| apbe family protein | BACCOPRO_00544 | Not Available | Negative | 546821 - 547834 | 37792.5 |
| hypothetical protein | BACCOPRO_00545 | Not Available | Negative | 547849 - 548424 | 21298.7 |
| hypothetical protein | BACCOPRO_00546 | Not Available | Negative | 548428 - 549141 | 26504.2 |
| hypothetical protein | BACCOPRO_00547 | Not Available | Negative | 549092 - 549640 | 20610.3 |
| glycosyltransferase, group 2 family protein | BACCOPRO_00548 | Not Available | Negative | 549648 - 550598 | 36322.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


