Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00529 | Not Available | Positive | 535109 - 535273 | 6159.33 |
| cysteine-rich domain protein | BACCOPRO_00530 | Not Available | Positive | 535317 - 536057 | 27315.9 |
| putative iron-sulfur cluster-binding protein | BACCOPRO_00531 | Not Available | Positive | 536054 - 537073 | 38084.0 |
| 6,7-dimethyl-8-ribityllumazine synthase | BACCOPRO_00532 | Not Available | Negative | 537137 - 537628 | 17294.8 |
| tetratricopeptide repeat protein | BACCOPRO_00534 | Not Available | Negative | 537782 - 538459 | 24492.1 |
| hypothetical protein | BACCOPRO_00533 | Not Available | Positive | 538436 - 538618 | 7096.07 |
| dna replication and repair protein recf | BACCOPRO_00535 | Not Available | Positive | 538608 - 539732 | 43167.6 |
| hypothetical protein | BACCOPRO_00536 | Not Available | Positive | 539719 - 540009 | 11102.6 |
| 5-formyltetrahydrofolate cyclo-ligase | BACCOPRO_00537 | Not Available | Negative | 539996 - 540460 | 17844.1 |
| peptidase, s41 family | BACCOPRO_00538 | Not Available | Negative | 540453 - 542204 | 64855.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


