Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter, atp-binding protein | BACCOPRO_00519 | Not Available | Negative | 527007 - 527753 | 27330.9 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_00520 | Not Available | Negative | 527763 - 529043 | 46600.8 |
| type i secretion outer membrane protein, tolc family | BACCOPRO_00521 | Not Available | Negative | 529018 - 530361 | 50386.3 |
| hypothetical protein | BACCOPRO_00523 | Not Available | Negative | 530358 - 530525 | 6574.13 |
| hypothetical protein | BACCOPRO_00522 | Not Available | Positive | 530506 - 530736 | 9164.49 |
| bacterial cytochrome ubiquinol oxidase | BACCOPRO_00524 | Not Available | Positive | 530827 - 532256 | 52482.6 |
| putative cytochrome d ubiquinol oxidase, subunit ii | BACCOPRO_00525 | Not Available | Positive | 532285 - 533436 | 43307.1 |
| hemerythrin hhe cation binding domain protein | BACCOPRO_00526 | Not Available | Positive | 533499 - 534245 | 28753.5 |
| hypothetical protein | BACCOPRO_00527 | Not Available | Positive | 534242 - 534380 | 5047.29 |
| transcriptional regulator, luxr family | BACCOPRO_00528 | Not Available | Positive | 534381 - 534830 | 16990.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


