Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative bacteriocin export abc transporter, lactococcin 972 group | BACCOPRO_00509 | Not Available | Positive | 513698 - 514444 | 27748.5 |
| efflux abc transporter, permease protein | BACCOPRO_00510 | Not Available | Positive | 514457 - 516799 | 88253.0 |
| hypothetical protein | BACCOPRO_00511 | Not Available | Positive | 516833 - 518419 | 61473.5 |
| efflux abc transporter, permease protein | BACCOPRO_00512 | Not Available | Positive | 518460 - 520814 | 88126.9 |
| hypothetical protein | BACCOPRO_00513 | Not Available | Positive | 520825 - 520950 | 4752.88 |
| sigma-54 interaction domain protein | BACCOPRO_00514 | Not Available | Positive | 520966 - 522330 | 50150.4 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_00515 | Not Available | Positive | 522332 - 523576 | 47317.7 |
| lyttr dna-binding domain protein | BACCOPRO_00516 | Not Available | Negative | 523798 - 524535 | 28315.6 |
| histidine kinase | BACCOPRO_00517 | Not Available | Negative | 524550 - 525596 | 40584.1 |
| efflux abc transporter, permease protein | BACCOPRO_00518 | Not Available | Negative | 525761 - 526981 | 44168.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


