Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00500 | Not Available | Negative | 505802 - 506002 | 7713.33 |
| hydrolase, carbon-nitrogen family | BACCOPRO_00499 | Not Available | Positive | 506001 - 507387 | 53584.3 |
| hypothetical protein | BACCOPRO_00501 | Not Available | Positive | 507388 - 507543 | 5949.07 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | BACCOPRO_00502 | Not Available | Negative | 507702 - 508271 | 22015.9 |
| glucose-1-phosphate thymidylyltransferase | BACCOPRO_00503 | Not Available | Negative | 508276 - 509181 | 33544.5 |
| hypothetical protein | BACCOPRO_00505 | Not Available | Negative | 509188 - 509322 | 5167.12 |
| hypothetical protein | BACCOPRO_00504 | Not Available | Positive | 509315 - 509668 | 12780.2 |
| glutathionylspermidine synthase | BACCOPRO_00506 | Not Available | Positive | 509683 - 510810 | 43085.6 |
| outer membrane efflux protein | BACCOPRO_00507 | Not Available | Positive | 511094 - 512443 | 50669.5 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_00508 | Not Available | Positive | 512457 - 513719 | 48348.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


