Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00488 | Not Available | Positive | 494113 - 494340 | 8217.84 |
| hypothetical protein | BACCOPRO_00490 | Not Available | Negative | 494402 - 495484 | 41321.1 |
| hypothetical protein | BACCOPRO_00491 | Not Available | Positive | 495503 - 497050 | 58397.0 |
| amp-binding enzyme | BACCOPRO_00492 | Not Available | Negative | 497127 - 498788 | 63042.3 |
| hypothetical protein | BACCOPRO_00493 | Not Available | Positive | 498935 - 499240 | 11947.3 |
| crossover junction endodeoxyribonuclease ruvc | BACCOPRO_00494 | Not Available | Positive | 499237 - 499806 | 20866.9 |
| pullulanase, type i | BACCOPRO_00495 | Not Available | Positive | 499816 - 501810 | 74262.2 |
| abc transporter, atp-binding protein | BACCOPRO_00496 | Not Available | Positive | 501820 - 503271 | 55037.5 |
| putative enoyl-[acyl-carrier-protein] reductase ii | BACCOPRO_00497 | Not Available | Negative | 503447 - 504400 | 34832.4 |
| transporter, anaerobic c4-dicarboxylate uptake (dcu) family | BACCOPRO_00498 | Not Available | Positive | 504501 - 505817 | 46730.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


