Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00479 | Not Available | Positive | 481617 - 483932 | 88416.4 |
| hypothetical protein | BACCOPRO_00480 | Not Available | Positive | 483946 - 484446 | 18125.0 |
| alpha amylase, catalytic domain protein | BACCOPRO_00481 | Not Available | Negative | 484542 - 486239 | 64423.0 |
| phospholipase, patatin family | BACCOPRO_00482 | Not Available | Negative | 486236 - 487039 | 29675.1 |
| [acyl-carrier-protein] s-malonyltransferase | BACCOPRO_00483 | Not Available | Negative | 487132 - 488019 | 31423.9 |
| putative phosphomethylpyrimidine kinase | BACCOPRO_00484 | Not Available | Negative | 488077 - 488449 | 13323.7 |
| putative phosphomethylpyrimidine kinase | BACCOPRO_00485 | Not Available | Negative | 488450 - 488804 | 12419.4 |
| hypothetical protein | BACCOPRO_00486 | Not Available | Positive | 488862 - 489095 | 9036.98 |
| hypothetical protein | BACCOPRO_00487 | Not Available | Negative | 489198 - 492113 | 112150.0 |
| hypothetical protein | BACCOPRO_00489 | Not Available | Negative | 492091 - 494118 | 77909.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


