Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein l35 | BACCOPRO_00469 | Not Available | Positive | 476334 - 476531 | 7371.37 |
| ribosomal protein l20 | BACCOPRO_00470 | Not Available | Positive | 476634 - 476984 | 13191.3 |
| hypothetical protein | BACCOPRO_00471 | Not Available | Negative | 477091 - 477294 | 7509.04 |
| hypothetical protein | BACCOPRO_00472 | Not Available | Positive | 477345 - 477479 | 4954.89 |
| 4fe-4s binding domain protein | BACCOPRO_00473 | Not Available | Positive | 477463 - 478269 | 30765.3 |
| dna/rna non-specific endonuclease | BACCOPRO_00474 | Not Available | Negative | 478350 - 479243 | 34153.7 |
| threonine/alanine trna ligase second additional domain protein | BACCOPRO_00475 | Not Available | Negative | 479248 - 479709 | 17358.7 |
| hypothetical protein | BACCOPRO_00476 | Not Available | Negative | 479943 - 480140 | 7048.67 |
| hpaii restriction endonuclease | BACCOPRO_00477 | Not Available | Positive | 480356 - 480972 | 23396.8 |
| hpaii restriction endonuclease | BACCOPRO_00478 | Not Available | Positive | 480975 - 481412 | 16863.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


