Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol-3-phosphate synthase | BACCOPRO_00449 | Not Available | Positive | 455266 - 456573 | 48597.6 |
| hypothetical protein | BACCOPRO_00450 | Not Available | Positive | 456902 - 459541 | 101350.0 |
| sigma-54 interaction domain protein | BACCOPRO_00451 | Not Available | Positive | 459616 - 460887 | 47367.7 |
| hypothetical protein | BACCOPRO_00452 | Not Available | Positive | 460874 - 461407 | 20212.9 |
| hypothetical protein | BACCOPRO_00453 | Not Available | Positive | 461411 - 462253 | 32276.9 |
| preprotein translocase, secg subunit | BACCOPRO_00454 | Not Available | Positive | 462260 - 462631 | 12830.6 |
| endoribonuclease l-psp | BACCOPRO_00455 | Not Available | Negative | 463062 - 464198 | 42755.8 |
| hypothetical protein | BACCOPRO_00456 | Not Available | Positive | 464442 - 465002 | 20575.3 |
| transcriptional regulator, arac family | BACCOPRO_00457 | Not Available | Negative | 465029 - 466018 | 38679.5 |
| wd40-like protein | BACCOPRO_00458 | Not Available | Negative | 466084 - 469350 | 123509.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


