Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transport complex, rnfabcdge type, g subunit | BACCOPRO_00419 | Not Available | Positive | 422548 - 423210 | 22321.9 |
| electron transport complex, rnfabcdge type, e subunit | BACCOPRO_00420 | Not Available | Positive | 423228 - 423812 | 20725.7 |
| electron transport complex, rnfabcdge type, a subunit | BACCOPRO_00421 | Not Available | Positive | 423832 - 424434 | 21240.3 |
| hypothetical protein | BACCOPRO_00422 | Not Available | Positive | 424452 - 424577 | 4920.34 |
| udp-glucose 4-epimerase | BACCOPRO_00423 | Not Available | Positive | 424590 - 425624 | 37817.4 |
| chloride transporter, clc family | BACCOPRO_00424 | Not Available | Positive | 425890 - 427203 | 47341.2 |
| mate efflux family protein | BACCOPRO_00425 | Not Available | Positive | 427265 - 428635 | 50051.9 |
| hypothetical protein | BACCOPRO_00426 | Not Available | Positive | 428664 - 428813 | 5639.04 |
| oxidoreductase, short chain dehydrogenase/reductase family protein | BACCOPRO_00427 | Not Available | Negative | 428796 - 429539 | 27748.9 |
| hypothetical protein | BACCOPRO_00428 | Not Available | Negative | 429554 - 433819 | 163618.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


