Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase, aaa family | BACCOPRO_00409 | Not Available | Positive | 413319 - 414593 | 47565.4 |
| 4-phosphoerythronate dehydrogenase | BACCOPRO_00410 | Not Available | Positive | 414621 - 415580 | 34624.0 |
| oxidoreductase | BACCOPRO_00411 | Not Available | Positive | 415580 - 416047 | 17074.5 |
| hypothetical protein | BACCOPRO_00412 | Not Available | Positive | 416196 - 416396 | 7433.21 |
| hypothetical protein | BACCOPRO_00413 | Not Available | Positive | 416667 - 416795 | 4848.66 |
| gtp-binding protein lepa | BACCOPRO_00414 | Not Available | Positive | 416838 - 418619 | 66566.7 |
| hypothetical protein | BACCOPRO_00415 | Not Available | Positive | 418770 - 419192 | 15318.3 |
| electron transport complex, rnfabcdge type, b subunit | BACCOPRO_00416 | Not Available | Positive | 419208 - 420176 | 33185.4 |
| electron transport complex, rnfabcdge type, c subunit | BACCOPRO_00417 | Not Available | Positive | 420216 - 421553 | 47243.2 |
| electron transport complex, rnfabcdge type, d subunit | BACCOPRO_00418 | Not Available | Positive | 421562 - 422551 | 35621.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


