Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:ubiquinone oxidoreductase, d subunit | BACCOPRO_00389 | Not Available | Positive | 395693 - 396331 | 22979.0 |
| nadh:ubiquinone oxidoreductase, e subunit | BACCOPRO_00390 | Not Available | Positive | 396351 - 396974 | 22087.1 |
| nadh:ubiquinone oxidoreductase, f subunit | BACCOPRO_00391 | Not Available | Positive | 396994 - 398262 | 46626.6 |
| Trna-arg | Not Available | Not Available | Positive | 398473 - 398546 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 398572 - 398645 | Not Available |
| antioxidant, ahpc/tsa family | BACCOPRO_00394 | Not Available | Positive | 398738 - 399826 | 40816.3 |
| transcriptional regulator, arac family | BACCOPRO_00395 | Not Available | Negative | 399970 - 400875 | 34076.5 |
| transcriptional regulator, arac family | BACCOPRO_00396 | Not Available | Negative | 400888 - 401799 | 35219.3 |
| putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | BACCOPRO_00397 | Not Available | Positive | 402045 - 403109 | 40304.3 |
| hypothetical protein | BACCOPRO_00398 | Not Available | Positive | 403160 - 404185 | 38749.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


