Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| potassium uptake protein, trkh family | BACCOPRO_00379 | Not Available | Positive | 380731 - 382236 | 56071.6 |
| hydrolase, carbon-nitrogen family | BACCOPRO_00380 | Not Available | Negative | 382592 - 383479 | 33196.5 |
| hypothetical protein | BACCOPRO_00381 | Not Available | Negative | 383490 - 384518 | 39298.8 |
| hypothetical protein | BACCOPRO_00383 | Not Available | Negative | 384547 - 388968 | 165643.0 |
| hypothetical protein | BACCOPRO_00382 | Not Available | Positive | 388963 - 389259 | 11594.5 |
| na+/h+ antiporter nhac | BACCOPRO_00384 | Not Available | Positive | 389281 - 390807 | 54817.6 |
| peptidase c1-like family | BACCOPRO_00385 | Not Available | Positive | 390826 - 392214 | 52876.4 |
| nadh:ubiquinone oxidoreductase, na(+)-translocating, a subunit | BACCOPRO_00386 | Not Available | Positive | 392428 - 393777 | 49365.9 |
| nadh:ubiquinone oxidoreductase, b subunit | BACCOPRO_00387 | Not Available | Positive | 393807 - 394982 | 42336.4 |
| nadh:ubiquinone oxidoreductase, na(+)-translocating, c subunit | BACCOPRO_00388 | Not Available | Positive | 395042 - 395674 | 22832.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


