Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yd repeat protein (3 repeats) | BACCOPRO_03870 | Not Available | Negative | 3828957 - 3829544 | 22026.1 |
| hypothetical protein | BACCOPRO_03871 | Not Available | Negative | 3829617 - 3830172 | 21377.3 |
| hypothetical protein | BACCOPRO_03872 | Not Available | Negative | 3830278 - 3830571 | 11357.9 |
| hypothetical protein | BACCOPRO_03873 | Not Available | Positive | 3831072 - 3831976 | 34695.0 |
| hypothetical protein | BACCOPRO_03874 | Not Available | Positive | 3832087 - 3832794 | 27301.6 |
| tetratricopeptide repeat protein | BACCOPRO_03875 | Not Available | Positive | 3832862 - 3833401 | 21024.9 |
| hypothetical protein | BACCOPRO_03876 | Not Available | Negative | 3833434 - 3833604 | 6406.92 |
| putative transposase, is4 family | BACCOPRO_03877 | Not Available | Positive | 3833827 - 3835044 | 46575.9 |
| hypothetical protein | BACCOPRO_03878 | Not Available | Negative | 3835095 - 3835616 | 20458.2 |
| rhs repeat-associated core domain protein | BACCOPRO_03879 | Not Available | Negative | 3835622 - 3836216 | 21902.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


