Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tat pathway signal sequence domain protein | BACCOPRO_03840 | Not Available | Positive | 3803547 - 3804521 | 36498.5 |
| glycosyl hydrolase family 2, sugar binding domain protein | BACCOPRO_03841 | Not Available | Negative | 3804548 - 3807001 | 92542.9 |
| hypothetical protein | BACCOPRO_03842 | Not Available | Negative | 3807160 - 3807775 | 23307.2 |
| hypothetical protein | BACCOPRO_03843 | Not Available | Positive | 3807776 - 3808223 | 17053.1 |
| hypothetical protein | BACCOPRO_03844 | Not Available | Negative | 3808320 - 3809162 | 32310.8 |
| hypothetical protein | BACCOPRO_03845 | Not Available | Negative | 3809256 - 3809700 | 17634.8 |
| integrase core domain protein | BACCOPRO_03846 | Not Available | Positive | 3810062 - 3811669 | 62071.3 |
| istb-like atp-binding protein | BACCOPRO_03847 | Not Available | Positive | 3811670 - 3812392 | 27407.2 |
| transposase, is4 family | BACCOPRO_03848 | Not Available | Positive | 3812530 - 3813819 | 49929.5 |
| hypothetical protein | BACCOPRO_03849 | Not Available | Positive | 3813989 - 3814198 | 7966.77 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


