Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonyl-coa epimerase | BACCOPRO_03830 | Not Available | Positive | 3790188 - 3790592 | 14603.7 |
| carboxyl transferase domain protein | BACCOPRO_03831 | Not Available | Positive | 3790704 - 3792257 | 56424.0 |
| sodium pump decarboxylase, gamma subunit | BACCOPRO_03832 | Not Available | Positive | 3792270 - 3793205 | 34854.7 |
| biotin-requiring enzyme | BACCOPRO_03833 | Not Available | Positive | 3793229 - 3793657 | 15465.9 |
| sodium ion-translocating decarboxylase, beta subunit | BACCOPRO_03834 | Not Available | Positive | 3793660 - 3794820 | 41133.6 |
| hypothetical protein | BACCOPRO_03835 | Not Available | Negative | 3795039 - 3797339 | 86291.2 |
| hypothetical protein | BACCOPRO_03836 | Not Available | Negative | 3797358 - 3798482 | 41608.7 |
| hypothetical protein | BACCOPRO_03837 | Not Available | Negative | 3798521 - 3800515 | 74441.9 |
| hypothetical protein | BACCOPRO_03838 | Not Available | Negative | 3800590 - 3800712 | 4576.19 |
| glycosyl hydrolase family 35 | BACCOPRO_03839 | Not Available | Negative | 3800757 - 3803108 | 88563.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


