Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antioxidant, ahpc/tsa family | BACCOPRO_03810 | Not Available | Negative | 3770961 - 3772121 | 45006.1 |
| hypothetical protein | BACCOPRO_03811 | Not Available | Negative | 3772136 - 3774454 | 88743.5 |
| tonb-dependent receptor | BACCOPRO_03812 | Not Available | Negative | 3774485 - 3775954 | 54800.2 |
| hypothetical protein | BACCOPRO_03813 | Not Available | Negative | 3775955 - 3776254 | 10979.7 |
| transcriptional regulator, blai/meci/copy family | BACCOPRO_03814 | Not Available | Negative | 3776288 - 3776671 | 14947.0 |
| hypothetical protein | BACCOPRO_03815 | Not Available | Negative | 3776734 - 3776853 | 4569.52 |
| hypothetical protein | BACCOPRO_03816 | Not Available | Positive | 3776991 - 3778113 | 42021.7 |
| hypothetical protein | BACCOPRO_03817 | Not Available | Positive | 3778235 - 3778681 | 16925.1 |
| glycosyl hydrolase family 20, catalytic domain protein | BACCOPRO_03818 | Not Available | Positive | 3779010 - 3781034 | 76966.7 |
| hypothetical protein | BACCOPRO_03819 | Not Available | Positive | 3781056 - 3782237 | 44846.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


