Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetrahydrofolate dehydrogenase/cyclohydrolase, nad(p)-binding domain protein | BACCOPRO_03800 | Not Available | Positive | 3764072 - 3764953 | 31658.7 |
| hypothetical protein | BACCOPRO_03801 | Not Available | Positive | 3764997 - 3765169 | 6302.44 |
| bacterial capsule synthesis protein | BACCOPRO_03802 | Not Available | Positive | 3765170 - 3766167 | 37944.3 |
| Trna-his | Not Available | Not Available | Positive | 3766184 - 3766260 | Not Available |
| Trna-his | Not Available | Not Available | Positive | 3766292 - 3766368 | Not Available |
| bacterial transferase hexapeptide repeat protein | BACCOPRO_03805 | Not Available | Positive | 3766546 - 3767133 | 21732.1 |
| nadh-dependent butanol dehydrogenase a | BACCOPRO_03806 | Not Available | Positive | 3767205 - 3768374 | 42438.9 |
| hypothetical protein | BACCOPRO_03807 | Not Available | Positive | 3768484 - 3769725 | 44498.4 |
| hypothetical protein | BACCOPRO_03808 | Not Available | Positive | 3769816 - 3769972 | 5816.89 |
| hypothetical protein | BACCOPRO_03809 | Not Available | Positive | 3769973 - 3770959 | 38141.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


